Glow Squid cannot spawn in Superflat where the conditions for their spawning are otherwise met. Recreating the same environment which spawns glow squid in a regular world in Superflat will not spawn glow squid.
I am not aware of the technical details behind this, so I am hopeful that someone more knowledgeable will be able to provide more information off the back of this post.
Are you creating a world with the “Water World” default template? If so, this issue is already tracked (and resolved) in MC-278879 .