When creating a chest with an item using the the /setblock command:
/setblock ~0 ~0 ~2 minecraft:chest 0 replace {Items:[{id:274,count:1}]}
If I use a hopper below the chest to remove the item, the item disappears entirely and is no longer in the chest or the hopper.
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Adding the Slot tag as follows does not fix the issue.
/setblock ~0 ~0 ~-2 minecraft:chest 0 destroy {Items:[{id:274,count:1,slot:1}]}
When the command is issued by the command block, the item doesn't just fall into the hopper, it no longer exists in any chest or hopper in the mechanism.
Cannot reproduce. Hopper pulls the items out of the chest for me.
Note that your text string isn't correct. I noted in your other bug, the C and the S need to be Capitalized.
You need the Slot tag. (http://www.minecraftwiki.net/wiki/Player.dat_Format#Item_structure)