If you move around blocks in low lighting, the top will sometimes turn dark.
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Without smooth lighting, the engine is more buggy than with smooth lighting, which could potentially be your issue.
Is this still a concern in the current Minecraft version? If so, please update the affected versions in order to best aid Mojang ensuring bugs are still valid in the latest releases/pre-releases.
Fast lighting is not meant to look especially nice. If you want great looks, fancy lighting is the way to go.
This ticket has been marked as a duplicate of MC-10135, in favor of the better description/information provided.
Is this also an issue with smooth lighting turned on?