Upon creating a super-flat world selecting or adding/editing in 'minecrat:water' it is changed to 'minecraft:air' this is only a visual glitch and does not effect the world's generation.
Gif explaining the Visual glitch a bit more: http://zippy.gfycat.com/BreakableFlashyArieltoucan.gif
Environment
Windows 7,
Java is up to date,
i'm unsure if this effects other versions.
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