When a stack of an item enters a hopper and space exists only for part of the stack, the stack is bounced out and duplicated, creating the stack in the world, and a stack inside of the hopper.
To replicate:
1) Configure hopper as shown
2) Drop a stack AS ONE, so that it is a single stack in the world, ontop of the hopper
3) Shift click to remove half a stack of duped item at a time.
Linked issues
duplicates 1
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Duplicate of: [MC-7055] - Please use the search function to see if your bug has already been submitted.
Currently over 45% of tickets are being closed as duplicate.
Apologies for duplicate entry, search showed nothing at time till after I posted bug.