I loaded up a world with 30-40 region files and put it up on my server. I downloaded the 16w02a snapshot from Mojang's website below the post announcing it and loaded that in. I did a bunch of redstone work, then I took a safe copy of the world. And it reported there were 10K region files. What???
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Why do you think this is a bug ?
Open one of the 10k files with NBTexplorer and report if there is something wrong with.
Alternatively you may attach one of those files to this ticket.
http://www.mediafire.com/download/g83atay63a60saj/r.3344.-15934.mca
But should there seriously be that many? Its a world filled with air!
In what Minecraft version did you create the world ?
What's the server version running that world ?
Did you use any external tools like MCEdit or so ?
Please attach the server.log after a restart of the server.
I think 1.7.2, I just opened the world in 1.9.
16w02a
Yes, and once recently to clone the blocks back.
http://www.mediafire.com/view/4055482l9xcxh54/nativelog.txt
http://www.mediafire.com/download/fg33amvp73amwcb/2016-01-19-1.log.gz
Do you think I should use 16w02a to generate an air world, then clone in all the stuff with MCEdit?
The world has a "spawnchunks" setup at X:1000 Y:10 Z:1000 and a 300 block radius lobby located around X:-800 Y:60 Z:-200. There is about 50 command blocks running in the spawn chunks. If you want the actual world file to look at, please let me know.