Redstone repeaters will sometimes stay activated/deactivated even when a redstone signal starts/stops. This has happened nearly every time I have updated a redstone signal. It doesn't seem to be happening at random, but not just to a single repeater either. There seems to be an area in which this is most prone to happen.
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Duplicate of MC-711, please use the search function to see if your bug has already been submitted. Currently over 51% of tickets are being closed as duplicate.