When first visiting a newly generated ruin, there won't be any bubble columns above the magma blocks. Reloading the chunks or causing a block update will fix that.
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I noticed this too but try moving away from the magma block after touching it. It will cause the bubble column affect and still generate no bubbles
I tested it (MC 1.13-pre2).
This is due to the generation of the structure. Sometimes the generation lags and this causes this bug.
I can confirm that this is a real thing. A block update will also make the bubbles appear.