I can see rain through blocks when I pick up an item. Noticed when I was chopping some trees while raining. Its not only transparent blocks, I tried it with a solid block above me, and it worked.
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Thank you for your report!
However, this issue is a Duplicate of MC-163575.
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Converted the file to MP4, so you do not have to download the .mkv file. Just click on Rain Bug - MP4.m4v 🙂