The End towers are being generated inside of the island, and the End island is in a huge, large shape.
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had the same issue im keeping the world with this very odd end generation for builds and study. i even made a backup i find it really fascinating that this big of a glitch can happen in a snapshot i knew snapshots had glitches but not as big as world generation lol! its quite interesting to say the least.
Duplicate of MC-221553.