When powering one face of a command block with a clock it has a chance to get stuck in the on position instead of pulsing. Removing the power source and connecting it to another face usually works.
Video explaining bug: https://www.youtube.com/watch?v=LneAPxUBCKo&feature=youtu.be
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Thanks! I'm on a mac and I spelled conventional wrong then it automatically changed it to comparator.
OK after testing this I can confirm, however the description is not accurate.
This issue only occurs when powering the north face of a command block, the command is issued once then the command block stays powered, instead of toggling with each pulse.
You might want to double check your Description: "...will work with a comparator clock but not with a comparator clock...".