After testing the workaround for the Mojang account in offline mode bug (MC-5443), I noticed all of my wolves had stopped responding to me. It appears that because I tamed them while in offline mode they were connected to my email "account" and now they won't listen to me under my regular account.
Duplicate of MC-3845 , please use the search function to see if your bug has already been submitted. Currently over 35% of tickets are being closed as duplicate.