Steps to reproduce:
Create a portal in the Nether
Spawn a mob (Creeper, Pigman, Cow, etc)
Push mob through portal
Enter portal
See mob
type /testfor @e
Result
The outcome is "That entity cannot be found" even though the mob is clearly there. It also will present this statement for the amount of traveled mobs there are. /kill does not work either. Exiting world, and reloading seems to fix this.
Confirmed for 14w21b