When you have a fill clock (example redstone_block/stone clock) and it is raining and you place fire on top of the filled area, you will have ghost light sources, which also don't disappear with F3+A. They disappear instead when you reopen the world, when you place another light source near it or when you place a block at the center of the fake light source.
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This looks like a case of the lighting simply not updating. Have you tried relogging or placing a block near it to see if it disappears?

Well like I said, when I reload the chunks, it changes nothing, but relogging removes this bug, same with placing a block where the fake light source gets emitted.

Probably duplicates MC-9188