[MC-78647] Clouds make water invisible/Clouds render in front of water

When looking at water with clouds below the water, the clouds appear as if they were in front of the water, not behind it.

Related issues

migrated 2015-03-14T02:08:51Z

[media][media]

migrated 2015-03-14T02:12:41Z

Notice how the clouds appear to be above the waterfall, though they are actually below it.

migrated 2015-03-14T03:50:39Z

Dupe of MC-9553

migrated 2015-03-14T13:02:32Z

Another example.

migrated 2015-03-14T13:04:04Z

Its already resolved as a duplicate. No need to update it.