Self explanatory. The villagers of a village leave the village and walk towards what I assume to be a stronghold and the village gets deserted.
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Seed is 1426639440. The village is not close to the spawn point. If you go away from the Mesa and into the forest , not the jungle , if you keep going forwards until you reach a swamp , the village is near the swamp. I followed one of the villagers because it might be going towards the stronghold.

@unknown 228529541 should be a good seed to try to reproduce this bug, but there may be too much near the village to rule out other possibilities. You spawn facing a village that has a stronghold beneath it. Good access to it via the well. Also, travel due south (pretty much following the river through the swamp) and you'll hit a witches hut right before another village, maybe 300m away. From the original village, travel due west across the water about 300m and you'll find a third village. If I recall correctly, these other two villages don't have strongholds beneath them.

I just realized something. If it is confirmed , how will you fix it?

Did seed and noticed some villagers were grouping around a cave enterance and the well.

Will test if it affects 0.15.0
I am afraid we can not reproduce this bug in the recent version. Please update affected versions if this bug still occurs.
Please provide:
A seed that you can easily replicate this in, if possible.
Confirm if there is an actual stronghold near the village that is affecting the villagers.