Attempting to do so, by DIRECTLY copying one of the stained glass pane textures for example, causes it to be completely transparent instead.
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Is there a property that allows you to do that? Like instead of "cube_all" or "cube_bottom_top" etc?
Only blocks that have semi-transparency allow it, that's not a bug and was actually part of optimization ages ago.
The same goes for normal transparency, you cannot make stone transparent.
Duplicate of MC-36472.