In this seed: 1446994643 I found three structures with some kind of overlapping with other generated stuff.
First Screenshot (320,74,-2): A Plains Village with a Ravin and a Lake in one place.
Second Screenhot (728,80,292): A Desert Pyramid under a Desert Village
Thirt Screenhot (-193,87,403): A Desert Well with a Cactus floating over the water. (This Overlap only appears in 1.7.10, in the 14w26c no Well is generated at this location)
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I'd like to request a review of this ticket since it was resolved by a moderator and I feel that it should be reopened to give Mojang Studios a decision on whether this is intentional or not. Link to reddit post regarding this: https://www.reddit.com/r/Mojira/comments/oes72q/requesting_the_review_of_mc59365/

I also fail to see how this is "no bug" - the results clearly aren't intended by Mojang to happen and can lead to adverse effects.
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This is no bug.