So I was in a village and I saw a sunflower floating on top of a path block
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The reason why this has occurred is because when the world first generates it will firstly generate terrain then place multiple features e.g. flowers trees. (This is why you might see grass on sand.) Then it generates structures from the most oldest to the newest.
So the flower generates first then the village generates after.
The individual structures that make up the village have structure voids so that air can generate inside the houses and on paths. So that's why the bottom half of the flower is broken.
This issue will not be fixed, see MCPE-188338.
What is your seed to show reproduce this issue?