Glass, in water, creates a current as if it were an air block; I have tried adding and removing blocks and water source block on the currents but they stay.
Ladders and Beacons, Glowstone,Sea Lanterns, Leaves, Ice and TNT also do this.
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Cleaning up old tickets: This ticket has not been updated recently (~1 year+) so is being closed as Cannot Reproduce. If you feel this is still a valid issue then please comment, or create a new ticket following the Issue Guidelines.
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Don't worry my dude, I have absolutely no idea why you are still playing 1.2.2, but on the Update Aquatic Beta they fixed this. Now we must wait for the full release, so we can finally see transparent blocks through water!