When updating an old world to the newest version of Minecraft, new blocks and mobs wont work properly. For examples, the bee nest won't work or appear properly but instead showing an update! block texture. On the same note bee's wont actually spawn near these bugged bee nest.
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Cleaning up old tickets: This ticket had been set to 'Awaiting Response', but has not received a response from the reporter (~3 months+) so is being closed as Incomplete. If you feel this is still a valid issue then please comment, or create a new ticket following the Issue Guidelines which includes steps to reproduce the problem.
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There will probably be a hotfix update very soon otherwise this is the most infamous update that broke Minecraft. Also check if you have snapshot enabled. If not wait for the next update.