@Zuriki Lee
The only thing that I can think of was that I had water breathing and night vision on when it happens. Survival mode.
Saving the world before it is reapplied and re-opening the world makes it not crash the next time it tries to re-apply, however the next time it would. (Unless world was unloaded and reentered)
Added the recurring crashlog.
I know that this will probably be deleted, but mine started working again and then stopped.