In villages some doors form indents while others are flush with the walls. The door on the left forms and indent while the one on the right is flush.
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no. the villages are not generating oddly, its just that the doors are inconsistent. just look at the picture. the church has the door on the inside while the house has it on the outside.
its not in just one seed, its basicly any village. just look at the doors. but if you look at the doors in superflat seed 5757 at coordinates x -450 z 750 you can look and see
As of 15w47c, I visited 3 villages in a superflat world; Every door was flush with the outside wall.
Also checked 15w47c. Visited two earlier example worlds/villages mentioned in the comments (normal 'Caprice' 141,280; superflat '5757' -450,750), both villages now had all doors on the outside edge (the "right" way). Since this is comparison to previous situation, it is definitely not just a random chance. So I think this has been ninja-fixed.
(Edit: though the superflat is so old that possible world generation is no longer comparable between then and now.)
Does MC-15820 describe your issue?