When using a Resource Pack on the stained glass it keeps flickering. In the gif, I am using a 32x RP but flickers even with 16x textures for me
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Isn't this a duplicate of MC-34682?
No. That's not Z-fighting, it's flickering in and out because the opacity is lower than a threshold, causing the game to sometimes display it and other times truncate it.

Duplicate of MC-31658 - If you have not, please use the search function in the future, to see if your bug has already been submitted. If you could not find the original report, please comment with the keywords you searched for.
Duplicate: https://mojang.atlassian.net/browse/MC-31658