I noticed that this is thrown in the terminal at start, I don't know if it's related.
ERROR:sandbox_linux.cc(346)] InitializeSandbox() called with multiple threads in process gpu-process.
I have just fixed my problem. There was a problem with the options.txt file, so I deleted it, restarted the game, and it worked!
This even happens when other structures are sharing the same space. Example: Seed -533884313, Coordinates: 56, 42, 328
I noticed that this is thrown in the terminal at start, I don't know if it's related.