In the 16w04a snapshot (of report), the crossed textures of saplings, plants, etc., are not mirrored to tie in correctly.
In 1.12.1 (before then as well) - now, the pumpkin and melon stems are mirrored on the north and south faces.
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This issue relates to MC-90906?
This should probably be described as "UV mapping in cross.json and tinted_cross.json models is incorrect."
The actual problem is that the UV mapping is backwards on some of the faces. It can even be fixed by a resource pack which I've put together here: https://dl.dropboxusercontent.com/u/12694594/CrossFix.zip
Still affects 21w40a. Requesting ownership a second time for reasons detailed in my previous comment.
I should also note that the resource pack attached to MC-212630 entirely fixes this issue.
Can confiirm.
In 1.8.9 the front and back sides of the textures are mirrored, but not in 16w04a