Don't know how to replicate, but I've come back and found both of my minecarts with hoppers in the same chunk gone and not possible that they were stolen. As a side note this has also affected the youtuber called Mumbo Jumbo recently in an episode entitled disappearing items.
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Is this still an issue in the most recent versions (currently that is 1.10.2, or 16w43a) of Minecraft? If so, please update the affected versions and help us keeping this ticket updated from time to time. If you are the owner/reporter of this ticket, you can modify the affected version(s) yourself.
It just happened to me.
I play MC on PS4 and I've made a farm with two hopper minecarts, and when I realized they just disappeared, with no reason.
Also, two villagers disappeared in my iron farm.
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The reporter of MC-211638 suggested that this might be because of lightning strikes.
Caroline Brady: for Bedrock Edition see MCPE-16863.
I can confirm that it keeps happening on java in version 1.21.4. I know it's not very useful, but for me, it seems that as the my server's world can't keep up (probably for a high entity quantity), some minecarts with hopper in certain areas (part of an storage, shulker unloaders etc) are disappearing. I have attached three screenshots of sections affected.
It happens with the lastest versions of minecraft too. The screenshots migrated from old bugtracker are from my server in java 1.21.4. The minecarts that dissapeared were static (some of them inside other blocks) and as it can be seens in the in the photos doesn’t follow chunk borders. So I don’t know if it’s really the same issue in all cases.
did you go far from the chunk with the minecarts for 5 min or more?